PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG048400.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 289aa MW: 29926.9 Da PI: 9.7275

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG048400.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.8e-07	25	49	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H TRIDC7BG048400.2 25 KSKPCTKFFSTAGCPFGSSCHFLHN 49 7789********************7 PP
2	zf-CCCH	24	6.6e-08	91	116	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7BG048400.2 91 KTRLCNKFNTAEGCKWGNKCHFAHGE 116 9***********************96 PP
3	zf-CCCH	37.5	4e-12	255	280	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7BG048400.2 255 FKTKLCDNFNK-GSCTFGDRCHFAHGE 280 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
RAPTAALPSS APEESESVQT GVGSKSKPCT KFFSTAGCPF GSSCHFLHNF PGGHQAVSKM 60 TNLGGPAVSA PQGRMPMGPG VPDGPPTPSL KTRLCNKFNT AEGCKWGNKC HFAHGERELG 120 KPMLLNNSMA PPMGPRPNGH FQPPPMPGPD MVPPSTFGAS ATAKISVDAS LAGAIIGKGG 180 VNTKHISRMT GAKLAIRDNE ADPNHKNIEL EGSFDQVNHA SAMVKELILR IGGNAPPQAK 240 NPGRGPAGGG GGSNFKTKLC DNFNKGSCTF GDRCHFAHGE SELRKSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	9e-55	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG048400.2