PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG048400.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 291aa MW: 30142.2 Da PI: 10.0602

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG048400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.9e-07	27	51	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H TRIDC7BG048400.1 27 KSKPCTKFFSTAGCPFGSSCHFLHN 51 7789********************7 PP
2	zf-CCCH	24	6.6e-08	93	118	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7BG048400.1 93 KTRLCNKFNTAEGCKWGNKCHFAHGE 118 9***********************96 PP
3	zf-CCCH	37.5	4e-12	257	282	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7BG048400.1 257 FKTKLCDNFNK-GSCTFGDRCHFAHGE 282 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
VPEGTNGGAA VKRARESESV QTGVGSKSKP CTKFFSTAGC PFGSSCHFLH NFPGGHQAVS 60 KMTNLGGPAV SAPQGRMPMG PGVPDGPPTP SLKTRLCNKF NTAEGCKWGN KCHFAHGERE 120 LGKPMLLNNS MAPPMGPRPN GHFQPPPMPG PDMVPPSTFG ASATAKISVD ASLAGAIIGK 180 GGVNTKHISR MTGAKLAIRD NEADPNHKNI ELEGSFDQVN HASAMVKELI LRIGGNAPPQ 240 AKNPGRGPAG GGGGSNFKTK LCDNFNKGSC TFGDRCHFAH GESELRKSAA A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	6e-55	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG048400.1