PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG025530.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 494aa MW: 52396.6 Da PI: 7.0089

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG025530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.8	1.6e-06	15	56	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++ C+ ++e + l+C+ + lC C + H H TRIDC7BG025530.1 15 QPWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 56 7899*****9****************999545555555 PP
2	CCT	63.9	5e-22	441	485	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R+ a++RYkeKrk+R++eK+irYesRK +A++R+RvKGrFvk++e TRIDC7BG025530.1 441 RDSAMQRYKEKRKNRRYEKHIRYESRKLRADTRKRVKGRFVKSNE 485 899***************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
ACRALAMKDN GGARQPWPCD YCGEAAAALH CRADAARLCV ACDRHVHAAN ALSRKHVRAP 60 LCAGCAARPA AARVAAGGGE PAFLCADCDG GCEGAARVPV EGFAGCPAAS ELAASWGVDL 120 LPGAGGAAAF GCGLGGGGDQ EDEDAFFFSS LDYSMLVDPE MRDLYVPCNP PEVAVSAGGG 180 RPLKGEALCH QLAEMARRET ETSQPQGYSD LSPRTPRRSS AGASGRLPDK QAPPPLPPAP 240 EVPCPYTSLL MMPSAHCAEL IGNDRLRDDD EEQLRWEFAP PSSVPPTQIW DFNLGRSRNH 300 NEKSAHEIGF GSNNGGFMIK SYSDMLKEIS CGTTKDLEDI YDSGYGAAAE DIMSTNICQV 360 PSKNVSTASN KRMKVSSCTS TMDGPTTSGS HVPASGTLGS SSHDRGAAPT REISFGDQRI 420 VPTGAEKPAA RIDSETLALN RDSAMQRYKE KRKNRRYEKH IRYESRKLRA DTRKRVKGRF 480 VKSNEALSAG SNGG

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

ACRALAMKDN GGARQPWPCD YCGEAAAALH CRADAARLCV ACDRHVHAAN ALSRKHVRAP  60
LCAGCAARPA AARVAAGGGE PAFLCADCDG GCEGAARVPV EGFAGCPAAS ELAASWGVDL  120
LPGAGGAAAF GCGLGGGGDQ EDEDAFFFSS LDYSMLVDPE MRDLYVPCNP PEVAVSAGGG  180
RPLKGEALCH QLAEMARRET ETSQPQGYSD LSPRTPRRSS AGASGRLPDK QAPPPLPPAP  240
EVPCPYTSLL MMPSAHCAEL IGNDRLRDDD EEQLRWEFAP PSSVPPTQIW DFNLGRSRNH  300
NEKSAHEIGF GSNNGGFMIK SYSDMLKEIS CGTTKDLEDI YDSGYGAAAE DIMSTNICQV  360
PSKNVSTASN KRMKVSSCTS TMDGPTTSGS HVPASGTLGS SSHDRGAAPT REISFGDQRI  420
VPTGAEKPAA RIDSETLALN RDSAMQRYKE KRKNRRYEKH IRYESRKLRA DTRKRVKGRF  480
VKSNEALSAG SNGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	2e-30	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG025530.1