PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG025060.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 409aa MW: 43503.4 Da PI: 6.954

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG025060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	4e-41	105	181	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+ TRIDC7BG025060.1 105 CAVDGCRADLSKCRDYHRRHKVCEAHSKTPVVTVAGREMRFCQQCSRFHLLTEFDEAKRSCRKRLDGHNRRRRKPQP 181 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MDWDLKMPPG AWDLTELEND AAAAPAAAQA SAGGIANAAG RPECSVDLKL GGLGECGAAP 60 DSRGLGKAPA EAASSASAPS AAKRPRASSG GGGWSGAGQQ QCPSCAVDGC RADLSKCRDY 120 HRRHKVCEAH SKTPVVTVAG REMRFCQQCS RFHLLTEFDE AKRSCRKRLD GHNRRRRKPQ 180 PDVMNSASFM TSQQGTRFSP FPTPRPEQNW PGIIKTEENP YYAHQLPLGI SNRQHFGGSA 240 STYAKEGRRF PFLQEGEINF ATGVALEPSV CQPLLKTVAP PESSSSSSKM FSDGLTPVLD 300 SDCALSLLSA PANSSGIDVG PMVQQTEHIP IAQPLFSNLQ FSSSSWFSRT QASTGTVSAT 360 GFSCPVGENE QLNNVLSSDN NDLNYNGIFH VGSEGSSDGA PPSLPFPWQ

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MDWDLKMPPG AWDLTELEND AAAAPAAAQA SAGGIANAAG RPECSVDLKL GGLGECGAAP  60
DSRGLGKAPA EAASSASAPS AAKRPRASSG GGGWSGAGQQ QCPSCAVDGC RADLSKCRDY  120
HRRHKVCEAH SKTPVVTVAG REMRFCQQCS RFHLLTEFDE AKRSCRKRLD GHNRRRRKPQ  180
PDVMNSASFM TSQQGTRFSP FPTPRPEQNW PGIIKTEENP YYAHQLPLGI SNRQHFGGSA  240
STYAKEGRRF PFLQEGEINF ATGVALEPSV CQPLLKTVAP PESSSSSSKM FSDGLTPVLD  300
SDCALSLLSA PANSSGIDVG PMVQQTEHIP IAQPLFSNLQ FSSSSWFSRT QASTGTVSAT  360
GFSCPVGENE QLNNVLSSDN NDLNYNGIFH VGSEGSSDGA PPSLPFPWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	179	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG025060.1