PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG019790.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 384aa MW: 43192 Da PI: 8.1842

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG019790.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	8e-06	6	27	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+ff+ G C G+ C F+H+ TRIDC7BG019790.7 6 VLCKFFMH-GACLKGEYCEFSHD 27 698888.***********5 PP
2	zf-CCCH	27.9	4e-09	35	55	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ TRIDC7BG019790.7 35 VCTFYQR-GSCSYGNRCRYDHV 55 5999999.*************7 PP
3	zf-CCCH	21.7	3.4e-07	166	188	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg TRIDC7BG019790.7 166 MPICS-FAAGGNCPYGEECPHMHG 188 68999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
STVRLVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ RGSCSYGNRC RYDHVKVSRN 60 NPVPPLPSSS TATRNSPLRP PPSSSTATHV ASTSPQLLSS GRPLHLGHQT NSSNQRQQIS 120 MDKLAVSESK PAWRNEVQLN SVSEDGIGWS SIQTAQNQTS MKLADMPICS FAAGGNCPYG 180 EECPHMHGDL CAFCGKMCLH PYRPDERQEH IKLCEKNHKR LEALKRSQEI ECSVCLDRVL 240 SKSTAAERKF GLLSECDHPF CISCIRNWRG NSPTSGMDVN SALRACPICR KLSYYVIPSV 300 LWYFSKEEKL EITENYKAKL KSIDCKYFDF GTGTCPFGTS CFYKHAYRDG RLEEVVLRHL 360 DCDDGSTLIA KNIRLSDFLG RLHL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

STVRLVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ RGSCSYGNRC RYDHVKVSRN  60
NPVPPLPSSS TATRNSPLRP PPSSSTATHV ASTSPQLLSS GRPLHLGHQT NSSNQRQQIS  120
MDKLAVSESK PAWRNEVQLN SVSEDGIGWS SIQTAQNQTS MKLADMPICS FAAGGNCPYG  180
EECPHMHGDL CAFCGKMCLH PYRPDERQEH IKLCEKNHKR LEALKRSQEI ECSVCLDRVL  240
SKSTAAERKF GLLSECDHPF CISCIRNWRG NSPTSGMDVN SALRACPICR KLSYYVIPSV  300
LWYFSKEEKL EITENYKAKL KSIDCKYFDF GTGTCPFGTS CFYKHAYRDG RLEEVVLRHL  360
DCDDGSTLIA KNIRLSDFLG RLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-120	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG019790.7