PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG019790.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 402aa MW: 44971.1 Da PI: 8.3897

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG019790.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	22	45	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ TRIDC7BG019790.4 22 KRVLCKFFMH-GACLKGEYCEFSHD 45 89**8888.***********5 PP
2	zf-CCCH	27.8	4.2e-09	53	73	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ TRIDC7BG019790.4 53 VCTFYQR-GSCSYGNRCRYDHV 73 5999999.*************7 PP
3	zf-CCCH	21.7	3.6e-07	184	206	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg TRIDC7BG019790.4 184 MPICS-FAAGGNCPYGEECPHMHG 206 68999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
GVSRVRVPGF GAHPVGSAMS TKRVLCKFFM HGACLKGEYC EFSHDWSDQA NNVCTFYQRG 60 SCSYGNRCRY DHVKVSRNNP VPPLPSSSTA TRNSPLRPPP SSSTATHVAS TSPQLLSSGR 120 PLHLGHQTNS SNQRQQISMD KLAVSESKPA WRNEVQLNSV SEDGIGWSSI QTAQNQTSMK 180 LADMPICSFA AGGNCPYGEE CPHMHGDLCA FCGKMCLHPY RPDERQEHIK LCEKNHKRLE 240 ALKRSQEIEC SVCLDRVLSK STAAERKFGL LSECDHPFCI SCIRNWRGNS PTSGMDVNSA 300 LRACPICRKL SYYVIPSVLW YFSKEEKLEI TENYKAKLKS IDCKYFDFGT GTCPFGTSCF 360 YKHAYRDGRL EEVVLRHLDC DDGSTLIAKN IRLSDFLGRL HL

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

GVSRVRVPGF GAHPVGSAMS TKRVLCKFFM HGACLKGEYC EFSHDWSDQA NNVCTFYQRG  60
SCSYGNRCRY DHVKVSRNNP VPPLPSSSTA TRNSPLRPPP SSSTATHVAS TSPQLLSSGR  120
PLHLGHQTNS SNQRQQISMD KLAVSESKPA WRNEVQLNSV SEDGIGWSSI QTAQNQTSMK  180
LADMPICSFA AGGNCPYGEE CPHMHGDLCA FCGKMCLHPY RPDERQEHIK LCEKNHKRLE  240
ALKRSQEIEC SVCLDRVLSK STAAERKFGL LSECDHPFCI SCIRNWRGNS PTSGMDVNSA  300
LRACPICRKL SYYVIPSVLW YFSKEEKLEI TENYKAKLKS IDCKYFDFGT GTCPFGTSCF  360
YKHAYRDGRL EEVVLRHLDC DDGSTLIAKN IRLSDFLGRL HL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-120	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG019790.4