PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG016570.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 432aa MW: 47213.2 Da PI: 5.1832

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG016570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.3	3.3e-08	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC+ C ++ H+ H++v TRIDC7BG016570.1 17 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHERV 60 578*****************************667888888876 PP
2	CCT	67.6	3.4e-23	372	415	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a TRIDC7BG016570.1 372 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 415 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MSCSGKAADG AMGSKAARAC DGCLRRRARW YCAADDAFLC QGCDTSVHSA NPLARRHERV 60 RLRPTSPLLP GAAPRERRRG DEVVPAWFKR KARTPRSQAK SVGRLLSRRL VVPQASGVDS 120 PEEHKCDVET DEEELLYRVP IFDPALAELC SPLTLEEATT AVASCCNEDG AIVENPTKPA 180 ATPTPAPVQF FPDSLVNLGP TDAELMEFAA DMEALLGRPG MDDGDEEEPF CMEALGLIEP 240 TDVDGGGVKL EIDHMRACGL EQKPEVSGDM FDIDFDYDSP LGTPDENAAS SGASADAQFT 300 PRSLALNLNY EAIMENWGSS PWADGERPHV KLDDYWPHDY YSLQEGAWMM GGVVGHGGEG 360 LGTPRLRMDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRANGAGG 420 DVPVAIATAC VA

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MSCSGKAADG AMGSKAARAC DGCLRRRARW YCAADDAFLC QGCDTSVHSA NPLARRHERV  60
RLRPTSPLLP GAAPRERRRG DEVVPAWFKR KARTPRSQAK SVGRLLSRRL VVPQASGVDS  120
PEEHKCDVET DEEELLYRVP IFDPALAELC SPLTLEEATT AVASCCNEDG AIVENPTKPA  180
ATPTPAPVQF FPDSLVNLGP TDAELMEFAA DMEALLGRPG MDDGDEEEPF CMEALGLIEP  240
TDVDGGGVKL EIDHMRACGL EQKPEVSGDM FDIDFDYDSP LGTPDENAAS SGASADAQFT  300
PRSLALNLNY EAIMENWGSS PWADGERPHV KLDDYWPHDY YSLQEGAWMM GGVVGHGGEG  360
LGTPRLRMDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRANGAGG  420
DVPVAIATAC VA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	399	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-80	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG016570.1