PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC7BG016570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 432aa MW: 47213.2 Da PI: 5.1832 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.3 | 3.3e-08 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC+ C ++ H+ H++v TRIDC7BG016570.1 17 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHERV 60 578*****************************667888888876 PP | |||||||
2 | CCT | 67.6 | 3.4e-23 | 372 | 415 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a TRIDC7BG016570.1 372 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 415 9*****************************************86 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 432 aa Download sequence |
MSCSGKAADG AMGSKAARAC DGCLRRRARW YCAADDAFLC QGCDTSVHSA NPLARRHERV 60 RLRPTSPLLP GAAPRERRRG DEVVPAWFKR KARTPRSQAK SVGRLLSRRL VVPQASGVDS 120 PEEHKCDVET DEEELLYRVP IFDPALAELC SPLTLEEATT AVASCCNEDG AIVENPTKPA 180 ATPTPAPVQF FPDSLVNLGP TDAELMEFAA DMEALLGRPG MDDGDEEEPF CMEALGLIEP 240 TDVDGGGVKL EIDHMRACGL EQKPEVSGDM FDIDFDYDSP LGTPDENAAS SGASADAQFT 300 PRSLALNLNY EAIMENWGSS PWADGERPHV KLDDYWPHDY YSLQEGAWMM GGVVGHGGEG 360 LGTPRLRMDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRANGAGG 420 DVPVAIATAC VA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 383 | 399 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-80 | CO-like family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC7BG016570.1 |