PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC7AG057850.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 300aa MW: 32409.8 Da PI: 9.7023 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 5.9e-12 | 5 | 27 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 elCr+++r G CkyG++C+F H+ TRIDC7AG057850.7 5 PELCRNYQR-GSCKYGAQCRFVHS 27 69*******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence |
MNRRPELCRN YQRGSCKYGA QCRFVHSNSN QQQQQQAKPN PFGFGAGGRQ QPQQQSFGAQ 60 SQQQQQQQQK PNPFGFGVQG GAAQQRNEPG PAKPFQNKWV RDPSAPPTKQ AEAQPAPQAA 120 HTSCADTESC RQQISDDFKN EAPLWKLTCY AHLRSGPCDI MGDISYEELR AKAYEEGKQG 180 KPMQSIVEGE RNLQNAKLAE FTNLLNKARA TPSFPTAGSF PEVKNNSTFG SSQTNGPPVF 240 SSFNQLGAAT NFGSGPRTAT PGVPMNTIFG QPTQSTPSFG APAFGSTGMR FGVPGSSTVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 4e-39 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC7AG057850.7 |