PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG056000.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 274aa MW: 28729.5 Da PI: 9.4283

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG056000.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.7e-06	17	34	9	26
GGGTS--TTTTT-SS-SS CS zf-CCCH 9 fartGtCkyGdrCkFaHg 26 ++ t C++G++C+F H TRIDC7AG056000.9 17 HQNTAGCPFGSSCHFLHN 34 677788***********7 PP
2	zf-CCCH	24.1	6.1e-08	76	101	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7AG056000.9 76 KTRLCNKFNTAEGCKWGNKCHFAHGE 101 9***********************96 PP
3	zf-CCCH	37.6	3.7e-12	240	265	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7AG056000.9 240 FKTKLCDNFNK-GSCTFGDRCHFAHGE 265 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
VHYTSEVESK CRLYTTHQNT AGCPFGSSCH FLHNFPGGHQ AVSKMTNLGG PAVSAPQGRM 60 PMGPGVPDGP PTPSLKTRLC NKFNTAEGCK WGNKCHFAHG ERELGKPMLL NNSMAPPMGP 120 RPNGHFQPSP MPGPDMVPPS TFGASATAKI SVDASLAGAI IGKGGVNTKH ISRMTGAKLA 180 IRDNEADPNH KNIELEGSFD QVNHASAMVK ELILRIGGNA PPQAKNPGRG PAGGGGGSNF 240 KTKLCDNFNK GSCTFGDRCH FAHGESELRK SAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-54	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG056000.9