PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7AG056000.8
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 271aa    MW: 28257 Da    PI: 9.8946
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7AG056000.8genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.6e-061431926
                      GGGTS--TTTTT-SS-SS CS
           zf-CCCH  9 fartGtCkyGdrCkFaHg 26
                      ++ t  C++G++C+F H 
  TRIDC7AG056000.8 14 HQNTAGCPFGSSCHFLHN 31
                      677788***********7 PP
2zf-CCCH24.26e-087398227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kt+lC+ f     Ck G++C+FaHg+
  TRIDC7AG056000.8 73 KTRLCNKFNTAEGCKWGNKCHFAHGE 98
                      9***********************96 PP
3zf-CCCH37.63.6e-12237262127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC++f + G C +GdrC+FaHg+
  TRIDC7AG056000.8 237 FKTKLCDNFNK-GSCTFGDRCHFAHGE 262
                       69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
TSNIGSKCRL YTTHQNTAGC PFGSSCHFLH NFPGGHQAVS KMTNLGGPAV SAPQGRMPMG  60
PGVPDGPPTP SLKTRLCNKF NTAEGCKWGN KCHFAHGERE LGKPMLLNNS MAPPMGPRPN  120
GHFQPSPMPG PDMVPPSTFG ASATAKISVD ASLAGAIIGK GGVNTKHISR MTGAKLAIRD  180
NEADPNHKNI ELEGSFDQVN HASAMVKELI LRIGGNAPPQ AKNPGRGPAG GGGGSNFKTK  240
LCDNFNKGSC TFGDRCHFAH GESELRKSAA A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-54C3H family protein