PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC7AG056000.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 26828.5 Da PI: 9.5316 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 5.7e-08 | 61 | 86 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7AG056000.7 61 KTRLCNKFNTAEGCKWGNKCHFAHGE 86 9***********************96 PP | |||||||
2 | zf-CCCH | 37.7 | 3.4e-12 | 225 | 250 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7AG056000.7 225 FKTKLCDNFNK-GSCTFGDRCHFAHGE 250 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
SVCSTAGCPF GSSCHFLHNF PGGHQAVSKM TNLGGPAVSA PQGRMPMGPG VPDGPPTPSL 60 KTRLCNKFNT AEGCKWGNKC HFAHGERELG KPMLLNNSMA PPMGPRPNGH FQPSPMPGPD 120 MVPPSTFGAS ATAKISVDAS LAGAIIGKGG VNTKHISRMT GAKLAIRDNE ADPNHKNIEL 180 EGSFDQVNHA SAMVKELILR IGGNAPPQAK NPGRGPAGGG GGSNFKTKLC DNFNKGSCTF 240 GDRCHFAHGE SELRKSAAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC7AG056000.7 |