PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG056000.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 299aa MW: 31127.3 Da PI: 9.8157

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG056000.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.1e-07	35	59	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H TRIDC7AG056000.6 35 KSKPCTKFFSTAGCPFGSSCHFLHN 59 7789********************7 PP
2	zf-CCCH	24	6.9e-08	101	126	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7AG056000.6 101 KTRLCNKFNTAEGCKWGNKCHFAHGE 126 9***********************96 PP
3	zf-CCCH	37.4	4.1e-12	265	290	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7AG056000.6 265 FKTKLCDNFNK-GSCTFGDRCHFAHGE 290 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
YKCQDFSKIN TVLTGGSNKF GVAESESVQT GVGSKSKPCT KFFSTAGCPF GSSCHFLHNF 60 PGGHQAVSKM TNLGGPAVSA PQGRMPMGPG VPDGPPTPSL KTRLCNKFNT AEGCKWGNKC 120 HFAHGERELG KPMLLNNSMA PPMGPRPNGH FQPSPMPGPD MVPPSTFGAS ATAKISVDAS 180 LAGAIIGKGG VNTKHISRMT GAKLAIRDNE ADPNHKNIEL EGSFDQVNHA SAMVKELILR 240 IGGNAPPQAK NPGRGPAGGG GGSNFKTKLC DNFNKGSCTF GDRCHFAHGE SELRKSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	4e-54	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG056000.6