PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG056000.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 285aa MW: 29475.4 Da PI: 9.4942

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG056000.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.7e-07	21	45	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H TRIDC7AG056000.3 21 KSKPCTKFFSTAGCPFGSSCHFLHN 45 7789********************7 PP
2	zf-CCCH	24.1	6.5e-08	87	112	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7AG056000.3 87 KTRLCNKFNTAEGCKWGNKCHFAHGE 112 9***********************96 PP
3	zf-CCCH	37.5	3.9e-12	251	276	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7AG056000.3 251 FKTKLCDNFNK-GSCTFGDRCHFAHGE 276 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
AAPPSSAPEE SESVQTGVGS KSKPCTKFFS TAGCPFGSSC HFLHNFPGGH QAVSKMTNLG 60 GPAVSAPQGR MPMGPGVPDG PPTPSLKTRL CNKFNTAEGC KWGNKCHFAH GERELGKPML 120 LNNSMAPPMG PRPNGHFQPS PMPGPDMVPP STFGASATAK ISVDASLAGA IIGKGGVNTK 180 HISRMTGAKL AIRDNEADPN HKNIELEGSF DQVNHASAMV KELILRIGGN APPQAKNPGR 240 GPAGGGGGSN FKTKLCDNFN KGSCTFGDRC HFAHGESELR KSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	3e-54	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG056000.3