PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG056000.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 269aa MW: 28183 Da PI: 10.6298

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG056000.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	6e-08	71	96	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ TRIDC7AG056000.2 71 KTRLCNKFNTAEGCKWGNKCHFAHGE 96 9***********************96 PP
2	zf-CCCH	37.6	3.6e-12	235	260	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC7AG056000.2 235 FKTKLCDNFNK-GSCTFGDRCHFAHGE 260 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
GGHQRRRRRQ ARQSTAGCPF GSSCHFLHNF PGGHQAVSKM TNLGGPAVSA PQGRMPMGPG 60 VPDGPPTPSL KTRLCNKFNT AEGCKWGNKC HFAHGERELG KPMLLNNSMA PPMGPRPNGH 120 FQPSPMPGPD MVPPSTFGAS ATAKISVDAS LAGAIIGKGG VNTKHISRMT GAKLAIRDNE 180 ADPNHKNIEL EGSFDQVNHA SAMVKELILR IGGNAPPQAK NPGRGPAGGG GGSNFKTKLC 240 DNFNKGSCTF GDRCHFAHGE SELRKSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-54	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG056000.2