PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG052620.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 438aa MW: 49068.5 Da PI: 5.4218

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG052620.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.6e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l +v+ +G g+W+ + r g++R++k+c++rw ++l TRIDC7AG052620.1 16 KGPWTSDEDQRLRTYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 63 79******************************************9986 PP
2	Myb_DNA-binding	48.2	2.5e-15	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+++++++++++G++ W++ a+ + gRt++++k++w++ TRIDC7AG052620.1 69 KGPFSKEEEQKIIELHALHGNK-WAKMASVLE-GRTDNEIKNFWNT 112 79******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
PVGTGGTVVS GPPMMKGPWT SDEDQRLRTY VEAHGEGNWN QVQRNAGLNR CGKSCRLRWA 60 NHLRPNLKKG PFSKEEEQKI IELHALHGNK WAKMASVLEG RTDNEIKNFW NTRTKRLQKA 120 GLGLYPDGLL SRLANQEMGS HSPDDSRGKK RQNELSRGIG LEFDDIIFEK LDYKKQSDNF 180 LTPNFTIQDS LPMNDINYPL KRHASSGIVS DYGGSPKCGQ FSNETEEASY NDLNSEMSIV 240 SFNNVISNSM PLLDDNFPIS GKILPIKMEL PSFQYVGYDT STNLLCPSST LPEQVHGFGV 300 PTQFQGEFDS VSFPYGYHFI PSSSIFDDNT LEYSSFNELR TYKSPTDLDA IFMDNKHNAD 360 ILHDKKFCSD PCATDVSAEA RFLNEDSTHS EYQPNNGPLN ALLYGNFCDD VTLSVRDDGH 420 QTLLSSNGVP NTHHLPGY

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

PVGTGGTVVS GPPMMKGPWT SDEDQRLRTY VEAHGEGNWN QVQRNAGLNR CGKSCRLRWA  60
NHLRPNLKKG PFSKEEEQKI IELHALHGNK WAKMASVLEG RTDNEIKNFW NTRTKRLQKA  120
GLGLYPDGLL SRLANQEMGS HSPDDSRGKK RQNELSRGIG LEFDDIIFEK LDYKKQSDNF  180
LTPNFTIQDS LPMNDINYPL KRHASSGIVS DYGGSPKCGQ FSNETEEASY NDLNSEMSIV  240
SFNNVISNSM PLLDDNFPIS GKILPIKMEL PSFQYVGYDT STNLLCPSST LPEQVHGFGV  300
PTQFQGEFDS VSFPYGYHFI PSSSIFDDNT LEYSSFNELR TYKSPTDLDA IFMDNKHNAD  360
ILHDKKFCSD PCATDVSAEA RFLNEDSTHS EYQPNNGPLN ALLYGNFCDD VTLSVRDDGH  420
QTLLSSNGVP NTHHLPGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26960.1	2e-56	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG052620.1