PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC7AG029220.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 384aa MW: 43201.1 Da PI: 8.1095 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 8e-06 | 6 | 27 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+ff+ G C G+ C F+H+ TRIDC7AG029220.6 6 VLCKFFMH-GACLKGEYCEFSHD 27 69**8888.*************5 PP | |||||||
2 | zf-CCCH | 27.9 | 4e-09 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ TRIDC7AG029220.6 35 VCTFYQR-GSCSYGNRCRYDHV 55 5999999.*************7 PP | |||||||
3 | zf-CCCH | 21.7 | 3.4e-07 | 166 | 188 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg TRIDC7AG029220.6 166 MPICS-FAAGGNCPYGEECPHMHG 188 68999.**************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence |
STVRLVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ RGSCSYGNRC RYDHVKVSRN 60 NPVPPLPSSS IATRNSPVRP PPSSSTATHV ASTSPQLLSS GRPLHLGHQT NSSNQRQQIS 120 MDKLAVSESK PAWRNEVQLD SVSEDGIGWS SIQTAQNQTS MKLADMPICS FAAGGNCPYG 180 EECPHMHGDL CAFCGKMCLH PYRPDERQEH IKLCEKNHKR LEALKRSQEI ECSVCLDRVL 240 SKPTAAERKF GLLSECDHPF CISCIRNWRG NSPTSGMDVN SALRACPICR KLSYYVIPSV 300 LWYFSKEEKL EITENYKAKL KSIDCKYFDF GTGTCPFGTS CFYKHAYRDG RLEEVVLRHL 360 DCDDGSTLIA KNIRLSDFLG RLHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-120 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC7AG029220.6 |