PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG029220.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 430aa MW: 48236 Da PI: 8.2727

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG029220.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.2e-06	23	46	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ TRIDC7AG029220.3 23 KRVLCKFFMH-GACLKGEYCEFSHD 46 89**8888.***********5 PP
2	zf-CCCH	27.7	4.6e-09	54	74	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ TRIDC7AG029220.3 54 VCTFYQR-GSCSYGNRCRYDHV 74 5999999.*************7 PP
3	zf-CCCH	21.6	4e-07	185	207	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg TRIDC7AG029220.3 185 MPICS-FAAGGNCPYGEECPHMHG 207 68999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
EGVPRVRVPG FGPHPLGPAM STKRVLCKFF MHGACLKGEY CEFSHDWSDQ ANNVCTFYQR 60 GSCSYGNRCR YDHVKVSRNN PVPPLPSSSI ATRNSPVRPP PSSSTATHVA STSPQLLSSG 120 RPLHLGHQTN SSNQRQQISM DKLAVSESKP AWRNEVQLDS VSEDGIGWSS IQTAQNQTSM 180 KLADMPICSF AAGGNCPYGE ECPHMHGDLC AFCGKMCLHP YRPDERQEHI KLCEKNHKRL 240 EALKRSQEIE CSVCLDRVLS KPTAAERKFG LLSECDHPFC ISCIRNWRGN SPTSGMDVNS 300 ALRACPICRK LSYYVIPSVL WYFSKEEKLE ITENYKAKLK SIDCKYFDFG TGTCPFGTSC 360 FYKHAYRDGR LEEVVLRHLD CDDGSTLIAK NIRCVLSICF MQSAYFTSPY FSPVLLSHSR 420 LSDFLGRLHL

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

EGVPRVRVPG FGPHPLGPAM STKRVLCKFF MHGACLKGEY CEFSHDWSDQ ANNVCTFYQR  60
GSCSYGNRCR YDHVKVSRNN PVPPLPSSSI ATRNSPVRPP PSSSTATHVA STSPQLLSSG  120
RPLHLGHQTN SSNQRQQISM DKLAVSESKP AWRNEVQLDS VSEDGIGWSS IQTAQNQTSM  180
KLADMPICSF AAGGNCPYGE ECPHMHGDLC AFCGKMCLHP YRPDERQEHI KLCEKNHKRL  240
EALKRSQEIE CSVCLDRVLS KPTAAERKFG LLSECDHPFC ISCIRNWRGN SPTSGMDVNS  300
ALRACPICRK LSYYVIPSVL WYFSKEEKLE ITENYKAKLK SIDCKYFDFG TGTCPFGTSC  360
FYKHAYRDGR LEEVVLRHLD CDDGSTLIAK NIRCVLSICF MQSAYFTSPY FSPVLLSHSR  420
LSDFLGRLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-114	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG029220.3