PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG029220.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 404aa MW: 45226.5 Da PI: 8.256

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG029220.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	24	47	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ TRIDC7AG029220.2 24 KRVLCKFFMH-GACLKGEYCEFSHD 47 89**8888.***********5 PP
2	zf-CCCH	27.8	4.2e-09	55	75	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ TRIDC7AG029220.2 55 VCTFYQR-GSCSYGNRCRYDHV 75 5999999.*************7 PP
3	zf-CCCH	21.7	3.7e-07	186	208	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg TRIDC7AG029220.2 186 MPICS-FAAGGNCPYGEECPHMHG 208 68999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
GEGVPRVRVP GFGPHPLGPA MSTKRVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ 60 RGSCSYGNRC RYDHVKVSRN NPVPPLPSSS IATRNSPVRP PPSSSTATHV ASTSPQLLSS 120 GRPLHLGHQT NSSNQRQQIS MDKLAVSESK PAWRNEVQLD SVSEDGIGWS SIQTAQNQTS 180 MKLADMPICS FAAGGNCPYG EECPHMHGDL CAFCGKMCLH PYRPDERQEH IKLCEKNHKR 240 LEALKRSQEI ECSVCLDRVL SKPTAAERKF GLLSECDHPF CISCIRNWRG NSPTSGMDVN 300 SALRACPICR KLSYYVIPSV LWYFSKEEKL EITENYKAKL KSIDCKYFDF GTGTCPFGTS 360 CFYKHAYRDG RLEEVVLRHL DCDDGSTLIA KNIRLSDFLG RLHL

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

GEGVPRVRVP GFGPHPLGPA MSTKRVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ  60
RGSCSYGNRC RYDHVKVSRN NPVPPLPSSS IATRNSPVRP PPSSSTATHV ASTSPQLLSS  120
GRPLHLGHQT NSSNQRQQIS MDKLAVSESK PAWRNEVQLD SVSEDGIGWS SIQTAQNQTS  180
MKLADMPICS FAAGGNCPYG EECPHMHGDL CAFCGKMCLH PYRPDERQEH IKLCEKNHKR  240
LEALKRSQEI ECSVCLDRVL SKPTAAERKF GLLSECDHPF CISCIRNWRG NSPTSGMDVN  300
SALRACPICR KLSYYVIPSV LWYFSKEEKL EITENYKAKL KSIDCKYFDF GTGTCPFGTS  360
CFYKHAYRDG RLEEVVLRHL DCDDGSTLIA KNIRLSDFLG RLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-119	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG029220.2