PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG029220.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 410aa MW: 45902.6 Da PI: 8.3339

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG029220.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	14	37	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ TRIDC7AG029220.1 14 KRVLCKFFMH-GACLKGEYCEFSHD 37 89**8888.***********5 PP
2	zf-CCCH	27.8	4.3e-09	45	65	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ TRIDC7AG029220.1 45 VCTFYQR-GSCSYGNRCRYDHV 65 5999999.*************7 PP
3	zf-CCCH	21.6	3.7e-07	176	198	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg TRIDC7AG029220.1 176 MPICS-FAAGGNCPYGEECPHMHG 198 68999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
GFGPHPLGPA MSTKRVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ RGSCSYGNRC 60 RYDHVKVSRN NPVPPLPSSS IATRNSPVRP PPSSSTATHV ASTSPQLLSS GRPLHLGHQT 120 NSSNQRQQIS MDKLAVSESK PAWRNEVQLD SVSEDGIGWS SIQTAQNQTS MKLADMPICS 180 FAAGGNCPYG EECPHMHGDL CAFCGKMCLH PYRPDERQEH IKLCEKNHKR LEALKRSQEI 240 ECSVCLDRVL SKPTAAERKF GLLSECDHPF CISCIRNWRG NSPTSGMDVN SALRACPICR 300 KLSYYVIPSV LWYFSKEEKL EITENYKAKL KSIDCKYFDF GTGTCPFGTS CFYKSMLTEM 360 AAWKKSYCDI LIVMMEVHLL LRTLGCQTSS AGCISRDLLH IYRIIPKTSV

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

GFGPHPLGPA MSTKRVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ RGSCSYGNRC  60
RYDHVKVSRN NPVPPLPSSS IATRNSPVRP PPSSSTATHV ASTSPQLLSS GRPLHLGHQT  120
NSSNQRQQIS MDKLAVSESK PAWRNEVQLD SVSEDGIGWS SIQTAQNQTS MKLADMPICS  180
FAAGGNCPYG EECPHMHGDL CAFCGKMCLH PYRPDERQEH IKLCEKNHKR LEALKRSQEI  240
ECSVCLDRVL SKPTAAERKF GLLSECDHPF CISCIRNWRG NSPTSGMDVN SALRACPICR  300
KLSYYVIPSV LWYFSKEEKL EITENYKAKL KSIDCKYFDF GTGTCPFGTS CFYKSMLTEM  360
AAWKKSYCDI LIVMMEVHLL LRTLGCQTSS AGCISRDLLH IYRIIPKTSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-100	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG029220.1