PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG026640.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 385aa MW: 42246.9 Da PI: 6.5041

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG026640.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.3	2.3e-06	22	65	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 r C+ + + +C+ ++ +lC++C ++H H++v TRIDC7AG026640.1 22 RLCDGCCAVPSVVYCRADSAYLCASCDAQIHAAnrvasrHERVL 65 67999999999********************6567888888775 PP
2	CCT	64.7	2.8e-22	316	359	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeK+k+RkFeK++rY++RKa+Ae RpR+KGrF+k++ TRIDC7AG026640.1 316 REARVLRYKEKKKSRKFEKTTRYATRKAYAEARPRIKGRFAKRS 359 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MNCVSNGTVY EEAVGREGSW ARLCDGCCAV PSVVYCRADS AYLCASCDAQ IHAANRVASR 60 HERVLLSEAY KHAPVVLECH ADAAALCAAY EAQVHYTNLL ATMHQRVPVV SHPVAAIPAA 120 SLFAEAAATA PVLGSKEEDA SWLLPSKDSD NHNHSGNHSS SSSSSSSRYF GEVDQYFDLV 180 GYNSYYDSHM NNQEQYVMQE QQHLQQMQKE YAEQQMQKEY VEKEGSECIV PSQSAIVSRP 240 HQSGYAPLVG AEQAASVTAG VSAYTDSVNN SISFSMEAGI VPDNTVQSSI LRPAGAIGLF 300 SSPSLQTPIH FSSKEREARV LRYKEKKKSR KFEKTTRYAT RKAYAEARPR IKGRFAKRSD 360 ADMEVDQTFS TAALSDSSYS TVPWF

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MNCVSNGTVY EEAVGREGSW ARLCDGCCAV PSVVYCRADS AYLCASCDAQ IHAANRVASR  60
HERVLLSEAY KHAPVVLECH ADAAALCAAY EAQVHYTNLL ATMHQRVPVV SHPVAAIPAA  120
SLFAEAAATA PVLGSKEEDA SWLLPSKDSD NHNHSGNHSS SSSSSSSRYF GEVDQYFDLV  180
GYNSYYDSHM NNQEQYVMQE QQHLQQMQKE YAEQQMQKEY VEKEGSECIV PSQSAIVSRP  240
HQSGYAPLVG AEQAASVTAG VSAYTDSVNN SISFSMEAGI VPDNTVQSSI LRPAGAIGLF  300
SSPSLQTPIH FSSKEREARV LRYKEKKKSR KFEKTTRYAT RKAYAEARPR IKGRFAKRSD  360
ADMEVDQTFS TAALSDSSYS TVPWF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15850.1	2e-50	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG026640.1