PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG025990.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 433aa MW: 47245.4 Da PI: 5.0976

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG025990.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.2	3.3e-08	18	61	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC+ C ++ H+ H++v TRIDC7AG025990.1 18 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHERV 61 578*****************************667888888876 PP
2	CCT	67.6	3.4e-23	373	416	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a TRIDC7AG025990.1 373 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 416 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
LMSCSGKAAD GAMGSKAARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER 60 VRLRPTSPLL PGAAPRERRR GDEVVPAWFK RKARTPRSQA KSVGRLLSRR LVVPQASGGD 120 SPEEQKCDVE TDEEELPYRV PIFDPALAEL CSPLTLEEAT TAVASCCNED GAIVEDPTKP 180 AATPSPVPVQ FFPDSLVNLG PTDAELMEFA ADMEALLGRP GMDDGDEEEP FCMEALGLIE 240 PMDVDGGRVK LEIDPMRACG LEQKPEVSGD MFDIDFDYDS PLGTPDENAA SSGASADAQF 300 TPRSLALNLN YEAIMENWGS SPWADGERPH VKLDDCWPHD YYSLQEGAWM MGGVVGHGGE 360 GLGTPRLRMD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRANGAG 420 GGVPVAIATA CVA

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

LMSCSGKAAD GAMGSKAARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER  60
VRLRPTSPLL PGAAPRERRR GDEVVPAWFK RKARTPRSQA KSVGRLLSRR LVVPQASGGD  120
SPEEQKCDVE TDEEELPYRV PIFDPALAEL CSPLTLEEAT TAVASCCNED GAIVEDPTKP  180
AATPSPVPVQ FFPDSLVNLG PTDAELMEFA ADMEALLGRP GMDDGDEEEP FCMEALGLIE  240
PMDVDGGRVK LEIDPMRACG LEQKPEVSGD MFDIDFDYDS PLGTPDENAA SSGASADAQF  300
TPRSLALNLN YEAIMENWGS SPWADGERPH VKLDDCWPHD YYSLQEGAWM MGGVVGHGGE  360
GLGTPRLRMD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRANGAG  420
GGVPVAIATA CVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	400	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-80	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG025990.1