PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7AG011180.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 288aa    MW: 31330.2 Da    PI: 10.6201
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7AG011180.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-1545104155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  TRIDC7AG011180.1  45 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 104
                       789******************888855566447*************************98 PP
2AP2538.4e-17147198155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  TRIDC7AG011180.1 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 198
                       89****99**********99966...3.6*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
GVKISVKRRK REPPAGSGLS GVTGNGKDGA GDKSVGGNAA AKRSSRFRGV SRHRWTGRFE  60
AHLWDKGTWN PTQKKKGKQV YLGAYNEEEA AARAYDLAAL KYWGPTTYTN FPVVDYEKEL  120
KVMQGVSREE YLASIRRKSN GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYS  180
TQEEAARAYD IAAIEYRGIN AVTNFDLSTY IRWLKPGAAP AEAMSGLSGA PSPSSTTTAT  240
TLVTPRDMGG LRLLPPSRNS LSLLGDVGSM VFGAGPSPSP SPSGTWYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17179PTQKKKGKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-85AP2 family protein