PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG071250.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 620aa MW: 68838.9 Da PI: 5.3232

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG071250.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	6e-07	80	102	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G C G+ C+F+Hgp TRIDC6BG071250.2 80 VPCYYYQK-GMCAKGNLCTFSHGP 102 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
CNKQGSECEF RHSDAARVNP RDCWYWFNGN CANAKCAFRH PPLDDLLGAS ATPRAPQQPA 60 PQVPVPAQAL LPNGTAKPVV PCYYYQKGMC AKGNLCTFSH GPQFAGNPAL QPHLQLKNSN 120 SWTKPSNSPQ QKTTPAIHGE LKVGAQNGRP AQKQNPTSRA YHSSGIYQNQ NNNPYVLSGA 180 AKSYQPQRSV EAESAENVIE TGEFVREPSA GSSVVAGSVE DDAERSFKEG HNSSYRRASG 240 EQNSGVRRQA HGGYELERSS HRSSSDRLVS ERRLTQRESM PVTAESSDLR HRLLKQRRLN 300 DSRSTQVPDR RDRRYPEDER DIHHRRRGEE RAAHDGLSRS RLQGRIKLPG ETSLDRLGPH 360 PHLEKERGHR DRFSPPKQTD LRAKLHDRLK ARSNEDVPGN LKSSVVKASS GEDAGVVNFS 420 GPKSLAELRA KKAAYRSGEN TVKNADRVAR PARMTSEIVA KRDSPDPVPF DGPKPLSVIL 480 KRKREAASAD SGSMQEEQVA GQEEQSLNNS RILDNDRVKA NTEDIEEEEE EFHPEDDVMY 540 DDDGLSPADD NAAEAAGDAG KEELEEGQQE DLETAAEEEY DYEATDDANA EGENDYQEYE 600 DDDDLEDDDD FARKVGVLIS

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

CNKQGSECEF RHSDAARVNP RDCWYWFNGN CANAKCAFRH PPLDDLLGAS ATPRAPQQPA  60
PQVPVPAQAL LPNGTAKPVV PCYYYQKGMC AKGNLCTFSH GPQFAGNPAL QPHLQLKNSN  120
SWTKPSNSPQ QKTTPAIHGE LKVGAQNGRP AQKQNPTSRA YHSSGIYQNQ NNNPYVLSGA  180
AKSYQPQRSV EAESAENVIE TGEFVREPSA GSSVVAGSVE DDAERSFKEG HNSSYRRASG  240
EQNSGVRRQA HGGYELERSS HRSSSDRLVS ERRLTQRESM PVTAESSDLR HRLLKQRRLN  300
DSRSTQVPDR RDRRYPEDER DIHHRRRGEE RAAHDGLSRS RLQGRIKLPG ETSLDRLGPH  360
PHLEKERGHR DRFSPPKQTD LRAKLHDRLK ARSNEDVPGN LKSSVVKASS GEDAGVVNFS  420
GPKSLAELRA KKAAYRSGEN TVKNADRVAR PARMTSEIVA KRDSPDPVPF DGPKPLSVIL  480
KRKREAASAD SGSMQEEQVA GQEEQSLNNS RILDNDRVKA NTEDIEEEEE EFHPEDDVMY  540
DDDGLSPADD NAAEAAGDAG KEELEEGQQE DLETAAEEEY DYEATDDANA EGENDYQEYE  600
DDDDLEDDDD FARKVGVLIS

Link Out ? help Back to Top
Ensembl	TRIDC6BG071250.2