PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG071250.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 656aa MW: 72687.1 Da PI: 5.2707

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG071250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.4e-07	116	138	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G C G+ C+F+Hgp TRIDC6BG071250.1 116 VPCYYYQK-GMCAKGNLCTFSHGP 138 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MDSAAAAAQA THAPADEEEA RRRRATDCIY YLASPLTCNK GSECEFRHSD AARVNPRDCW 60 YWFNGNCANA KCAFRHPPLD DLLGASATPR APQQPAPQVP VPAQALLPNG TAKPVVPCYY 120 YQKGMCAKGN LCTFSHGPQF AGNPALQPHL QLKNSNSWTK PSNSPQQKTT PAIHGELKVG 180 AQNGRPAQKQ NPTSRAYHSS GIYQNQNNNP YVLSGAAKSY QPQRSVEAES AENVIETGEF 240 VREPSAGSSV VAGSVEDDAE RSFKEGHNSS YRRASGEQNS GVRRQAHGGY ELERSSHRSS 300 SDRLVSERRL TQRESMPVTA ESSDLRHRLL KQRRLNDSRS TQVPDRRDRR YPEDERDIHH 360 RRRGEERAAH DGLSRSRLQG RIKLPGETSL DRLGPHPHLE KERGHRDRFS PPKQTDLRAK 420 LHDRLKARSN EDVPGNLKSS VVKASSGEDA GVVNFSGPKS LAELRAKKAA YRSGENTVKN 480 ADRVARPARM TSEIVAKRDS PDPVPFDGPK PLSVILKRKR EAASADSGSM QEEQVAGQEE 540 QSLNNSRILD NDRVKANTED IEEEEEEFHP EDDVMYDDDG LSPADDNAAE AAGDAGKEEL 600 EEGQQEDLET AAEEEYDYEA TDDANAEGEN DYQEYEDDDD LEDDDDFARK VGVLIS

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MDSAAAAAQA THAPADEEEA RRRRATDCIY YLASPLTCNK GSECEFRHSD AARVNPRDCW  60
YWFNGNCANA KCAFRHPPLD DLLGASATPR APQQPAPQVP VPAQALLPNG TAKPVVPCYY  120
YQKGMCAKGN LCTFSHGPQF AGNPALQPHL QLKNSNSWTK PSNSPQQKTT PAIHGELKVG  180
AQNGRPAQKQ NPTSRAYHSS GIYQNQNNNP YVLSGAAKSY QPQRSVEAES AENVIETGEF  240
VREPSAGSSV VAGSVEDDAE RSFKEGHNSS YRRASGEQNS GVRRQAHGGY ELERSSHRSS  300
SDRLVSERRL TQRESMPVTA ESSDLRHRLL KQRRLNDSRS TQVPDRRDRR YPEDERDIHH  360
RRRGEERAAH DGLSRSRLQG RIKLPGETSL DRLGPHPHLE KERGHRDRFS PPKQTDLRAK  420
LHDRLKARSN EDVPGNLKSS VVKASSGEDA GVVNFSGPKS LAELRAKKAA YRSGENTVKN  480
ADRVARPARM TSEIVAKRDS PDPVPFDGPK PLSVILKRKR EAASADSGSM QEEQVAGQEE  540
QSLNNSRILD NDRVKANTED IEEEEEEFHP EDDVMYDDDG LSPADDNAAE AAGDAGKEEL  600
EEGQQEDLET AAEEEYDYEA TDDANAEGEN DYQEYEDDDD LEDDDDFARK VGVLIS

Link Out ? help Back to Top
Ensembl	TRIDC6BG071250.1