PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG052290.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 418aa MW: 45509.9 Da PI: 6.517

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG052290.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.4	7.1e-09	23	64	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ TRIDC6BG052290.5 23 ARACDGCMRRRARWYCAADDAFLCQACDTSVHSAnplarrHE 64 578*****************************6567777776 PP
2	CCT	67	5.2e-23	363	405	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ TRIDC6BG052290.5 363 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 405 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
LEAAEMGGSD QKAAGGAVGG KAARACDGCM RRRARWYCAA DDAFLCQACD TSVHSANPLA 60 RRHERLRLRA TSPLPAEGVA AVKGSPATTS KCLDVAPAWP KRKARTRRPP VKSVGQLLSR 120 RLVVPEVGAG ESSTSDERRA PEEEQLLYRV PVFDPALAEF CSPPPIDDSR HGEDVEGAVE 180 DTKEHMATPS PVQELPDCFA SFGPTDADLR EFAADMEALL GQGLDDGNEL EDSFYMEALG 240 LISPPGEHGG RVKVEADGSL FNGSPPTLVD DDDSFEHKTS TASNGDAVDD AQFLKRSLDL 300 RLNYEAVMES WGSSPWTDGR RPSGQLDDLL LHDHAVHGMW TAGGGGRHGD AAWPPRPRTD 360 EWREARVSRY REKRRTRLFA KKIRYEVRKL NAEKRPRMKG RFVKRTGGAA AAAPCAVT

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

LEAAEMGGSD QKAAGGAVGG KAARACDGCM RRRARWYCAA DDAFLCQACD TSVHSANPLA  60
RRHERLRLRA TSPLPAEGVA AVKGSPATTS KCLDVAPAWP KRKARTRRPP VKSVGQLLSR  120
RLVVPEVGAG ESSTSDERRA PEEEQLLYRV PVFDPALAEF CSPPPIDDSR HGEDVEGAVE  180
DTKEHMATPS PVQELPDCFA SFGPTDADLR EFAADMEALL GQGLDDGNEL EDSFYMEALG  240
LISPPGEHGG RVKVEADGSL FNGSPPTLVD DDDSFEHKTS TASNGDAVDD AQFLKRSLDL  300
RLNYEAVMES WGSSPWTDGR RPSGQLDDLL LHDHAVHGMW TAGGGGRHGD AAWPPRPRTD  360
EWREARVSRY REKRRTRLFA KKIRYEVRKL NAEKRPRMKG RFVKRTGGAA AAAPCAVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	106	PKRKART
2	374	390	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	6e-61	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG052290.5