PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG052290.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 431aa MW: 46896.4 Da PI: 6.6753

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG052290.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.3	7.4e-09	22	63	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ TRIDC6BG052290.4 22 ARACDGCMRRRARWYCAADDAFLCQACDTSVHSAnplarrHE 63 578*****************************6567777776 PP
2	CCT	66.9	5.5e-23	376	418	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ TRIDC6BG052290.4 376 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 418 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
EAAEMGGSDQ KAAGGAVGGK AARACDGCMR RRARWYCAAD DAFLCQACDT SVHSANPLAR 60 RHERLRLRAT SPLPAEGVAA VKGSPATTSK CLDVAPAWPK RKARTRRPPV KSVGQLLSRR 120 LVVPEVGAGE SSTSDERRAP EEEQLLYRVP VFDPALAEFC SPPPIDDSRH GEDVEGAVED 180 TKEHMATPSP VQELPDCFAS FGPTDADLRE FAADMEALLG QGLDDGNELE DSFYMEALGL 240 ISPPGEHGGR VKVEADGSLV SRSNGVLASG HDLKREFNGS PPTLVDDDDS FEHKTSTASN 300 GDAVDDAQFL KRSLDLRLNY EAVMESWGSS PWTDGRRPSG QLDDLLLHDH GMWTAGGGGR 360 HGDAAWPPRP RTDEWREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR MKGRFVKRTG 420 GAAAAAPCAV T

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

EAAEMGGSDQ KAAGGAVGGK AARACDGCMR RRARWYCAAD DAFLCQACDT SVHSANPLAR  60
RHERLRLRAT SPLPAEGVAA VKGSPATTSK CLDVAPAWPK RKARTRRPPV KSVGQLLSRR  120
LVVPEVGAGE SSTSDERRAP EEEQLLYRVP VFDPALAEFC SPPPIDDSRH GEDVEGAVED  180
TKEHMATPSP VQELPDCFAS FGPTDADLRE FAADMEALLG QGLDDGNELE DSFYMEALGL  240
ISPPGEHGGR VKVEADGSLV SRSNGVLASG HDLKREFNGS PPTLVDDDDS FEHKTSTASN  300
GDAVDDAQFL KRSLDLRLNY EAVMESWGSS PWTDGRRPSG QLDDLLLHDH GMWTAGGGGR  360
HGDAAWPPRP RTDEWREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR MKGRFVKRTG  420
GAAAAAPCAV T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	105	PKRKART
2	387	403	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-64	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG052290.4