PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG052230.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 27068.6 Da PI: 9.5609

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG052230.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.8	1.4e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++nrqvtfskRr g+lKKA+ELS+LCdaev +++fsstg+l+e+ss TRIDC6BG052230.7 10 RIDNSTNRQVTFSKRRGGLLKKAKELSILCDAEVGLVVFSSTGRLHEFSS 59 8***********************************************96 PP
2	K-box	72.6	1.1e-24	78	169	8	98
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++ + +q+e+a L+++++ Lq+++++l+Ge+L+ L +++Lq Le++Le sl++i+++K++ll+++ieel +k +++en++L ++l TRIDC6BG052230.7 78 GvNATSEIKLWQREAASLRQQLHDLQESHKQLMGEELSGLGVRDLQGLENRLEMSLRSIKTRKDNLLRSEIEELHRKGSLIHQENTELCRRL 169 247788999******************************************************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGKIVIRR IDNSTNRQVT FSKRRGGLLK KAKELSILCD AEVGLVVFSS TGRLHEFSST 60 NMKSVIDRYT KAKEEQPGVN ATSEIKLWQR EAASLRQQLH DLQESHKQLM GEELSGLGVR 120 DLQGLENRLE MSLRSIKTRK DNLLRSEIEE LHRKGSLIHQ ENTELCRRLN IMSQQKMELS 180 RKLQSCESGG ATDANKSSST PYSFRIVQDA NIPANLELSQ AQQNEQEHSE TGAPALGALG 240 VG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	2e-88	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG052230.7