PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG051890.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 376aa MW: 41596.3 Da PI: 5.9003

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG051890.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.9	1.3e-05	31	73	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ ++ + +C + +lC++C ++ H+ H++v TRIDC6BG051890.4 31 RPCDGCHAAPSAVYCCADAAYLCASCDTQVHSAnrvasrHERV 73 67*****************************657788888776 PP
2	zf-B_box	26.5	1.3e-08	73	118	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+++e+ ++ l C+ + lC C + H+ H++vp+ TRIDC6BG051890.4 73 VRVCETCESAPAVLACHADAAALCTACDAQVHSAnpiaqrHQRVPV 118 689*****************************66899999999986 PP
3	CCT	67.8	2.9e-23	306	349	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeK++tRkF+K+irY++RKa+Ae RpR+KGrF+k++ TRIDC6BG051890.4 306 REARVLRYKEKKQTRKFQKTIRYATRKAYAEARPRIKGRFAKRS 349 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
ETSSVAATST CNHKINLLEK EAGRTSFPWA RPCDGCHAAP SAVYCCADAA YLCASCDTQV 60 HSANRVASRH ERVRVCETCE SAPAVLACHA DAAALCTACD AQVHSANPIA QRHQRVPVLP 120 LPAVALPAAS GFVEAEASVT AHGDKEEGEE VDSWLLRRNS DDNNCANKID RYFNLVGYNM 180 YYDNITCDPR PEEQYRMQEQ QHVQNRYIEK EGCECVVPPQ VVMASEQQES DYGTIGAGQA 240 ASVTAMTSTY TASISNDISF SSMEVGIVPD NTRPDISNSN ILTSSEAMEL SGHSLQMPVH 300 FNSMDREARV LRYKEKKQTR KFQKTIRYAT RKAYAEARPR IKGRFAKRSD IEHEEDHMLS 360 PPALQDTSSY NTAPWF

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

ETSSVAATST CNHKINLLEK EAGRTSFPWA RPCDGCHAAP SAVYCCADAA YLCASCDTQV  60
HSANRVASRH ERVRVCETCE SAPAVLACHA DAAALCTACD AQVHSANPIA QRHQRVPVLP  120
LPAVALPAAS GFVEAEASVT AHGDKEEGEE VDSWLLRRNS DDNNCANKID RYFNLVGYNM  180
YYDNITCDPR PEEQYRMQEQ QHVQNRYIEK EGCECVVPPQ VVMASEQQES DYGTIGAGQA  240
ASVTAMTSTY TASISNDISF SSMEVGIVPD NTRPDISNSN ILTSSEAMEL SGHSLQMPVH  300
FNSMDREARV LRYKEKKQTR KFQKTIRYAT RKAYAEARPR IKGRFAKRSD IEHEEDHMLS  360
PPALQDTSSY NTAPWF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	5e-67	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG051890.4