PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG051890.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CO-like | ||||||||
Protein Properties | Length: 378aa MW: 42045 Da PI: 5.9305 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.9 | 1.3e-05 | 33 | 75 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ ++ + +C + +lC++C ++ H+ H++v TRIDC6BG051890.3 33 RPCDGCHAAPSAVYCCADAAYLCASCDTQVHSAnrvasrHERV 75 67*****************************657788888776 PP | |||||||
2 | zf-B_box | 26.5 | 1.3e-08 | 75 | 120 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+++e+ ++ l C+ + lC C + H+ H++vp+ TRIDC6BG051890.3 75 VRVCETCESAPAVLACHADAAALCTACDAQVHSAnpiaqrHQRVPV 120 689*****************************66899999999986 PP | |||||||
3 | CCT | 67.8 | 2.9e-23 | 308 | 351 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeK++tRkF+K+irY++RKa+Ae RpR+KGrF+k++ TRIDC6BG051890.3 308 REARVLRYKEKKQTRKFQKTIRYATRKAYAEARPRIKGRFAKRS 351 9*****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence |
PPTSCKIYMF MNCNFNSNLL EKEAGRTSFP WARPCDGCHA APSAVYCCAD AAYLCASCDT 60 QVHSANRVAS RHERVRVCET CESAPAVLAC HADAAALCTA CDAQVHSANP IAQRHQRVPV 120 LPLPAVALPA ASGFVEAEAS VTAHGDKEEG EEVDSWLLRR NSDDNNCANK IDRYFNLVGY 180 NMYYDNITCD PRPEEQYRMQ EQQHVQNRYI EKEGCECVVP PQVVMASEQQ ESDYGTIGAG 240 QAASVTAMTS TYTASISNDI SFSSMEVGIV PDNTRPDISN SNILTSSEAM ELSGHSLQMP 300 VHFNSMDREA RVLRYKEKKQ TRKFQKTIRY ATRKAYAEAR PRIKGRFAKR SDIEHEEDHM 360 LSPPALQDTS SYNTAPWF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-66 | CO-like family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG051890.3 |