PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG051890.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 378aa MW: 42045 Da PI: 5.9305

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG051890.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.9	1.3e-05	33	75	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ ++ + +C + +lC++C ++ H+ H++v TRIDC6BG051890.3 33 RPCDGCHAAPSAVYCCADAAYLCASCDTQVHSAnrvasrHERV 75 67*****************************657788888776 PP
2	zf-B_box	26.5	1.3e-08	75	120	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+++e+ ++ l C+ + lC C + H+ H++vp+ TRIDC6BG051890.3 75 VRVCETCESAPAVLACHADAAALCTACDAQVHSAnpiaqrHQRVPV 120 689*****************************66899999999986 PP
3	CCT	67.8	2.9e-23	308	351	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeK++tRkF+K+irY++RKa+Ae RpR+KGrF+k++ TRIDC6BG051890.3 308 REARVLRYKEKKQTRKFQKTIRYATRKAYAEARPRIKGRFAKRS 351 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
PPTSCKIYMF MNCNFNSNLL EKEAGRTSFP WARPCDGCHA APSAVYCCAD AAYLCASCDT 60 QVHSANRVAS RHERVRVCET CESAPAVLAC HADAAALCTA CDAQVHSANP IAQRHQRVPV 120 LPLPAVALPA ASGFVEAEAS VTAHGDKEEG EEVDSWLLRR NSDDNNCANK IDRYFNLVGY 180 NMYYDNITCD PRPEEQYRMQ EQQHVQNRYI EKEGCECVVP PQVVMASEQQ ESDYGTIGAG 240 QAASVTAMTS TYTASISNDI SFSSMEVGIV PDNTRPDISN SNILTSSEAM ELSGHSLQMP 300 VHFNSMDREA RVLRYKEKKQ TRKFQKTIRY ATRKAYAEAR PRIKGRFAKR SDIEHEEDHM 360 LSPPALQDTS SYNTAPWF

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

PPTSCKIYMF MNCNFNSNLL EKEAGRTSFP WARPCDGCHA APSAVYCCAD AAYLCASCDT  60
QVHSANRVAS RHERVRVCET CESAPAVLAC HADAAALCTA CDAQVHSANP IAQRHQRVPV  120
LPLPAVALPA ASGFVEAEAS VTAHGDKEEG EEVDSWLLRR NSDDNNCANK IDRYFNLVGY  180
NMYYDNITCD PRPEEQYRMQ EQQHVQNRYI EKEGCECVVP PQVVMASEQQ ESDYGTIGAG  240
QAASVTAMTS TYTASISNDI SFSSMEVGIV PDNTRPDISN SNILTSSEAM ELSGHSLQMP  300
VHFNSMDREA RVLRYKEKKQ TRKFQKTIRY ATRKAYAEAR PRIKGRFAKR SDIEHEEDHM  360
LSPPALQDTS SYNTAPWF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-66	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG051890.3