PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG051370.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 404aa MW: 44116.2 Da PI: 4.8762

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG051370.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.6	9.5e-07	6	37	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e++ +++C+++ lC +C + H+ TRIDC6BG051370.5 6 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 37 6***************************9954 PP
2	zf-B_box	22.9	1.8e-07	49	80	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+++ ++++ C + ++ lC++C ++H TRIDC6BG051370.5 49 LCDRCASQPAAVRCLEENTSLCQNCDWNGHAA 80 7***************************9955 PP
3	CCT	62	1.9e-21	347	390	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R al+RY eK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ TRIDC6BG051370.5 347 RGSALSRYMEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 390 6789*************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MIMGALCDFC GEQRPTIYCR SDAASLCLSC DRNVHSANTL SQRHMRTLLC DRCASQPAAV 60 RCLEENTSLC QNCDWNGHAA TSLAAGHLRQ TINCYSGCPS SEELARIWSF DFDAPSAAAE 120 PNCEEGISMM SINDSGVSNH CGAQQDSSLL DMANTSLISD PHTREKLNTG DEMNLRPLPT 180 HQPAQSVSMA PKVPCVTDDD MFNDGSIYEN FCVDDAGLTF ENYEELFGTP HIQTEQLFDD 240 AGIDSYFGMK EMPAADCNEQ SSSVYFPCKG YITLKPAQPE CSNAVSADSS LCVPARQAIS 300 SISLSFSALT GESNAGDHQD CGVSPLLLTG EPPWLPGPEG SIASGSRGSA LSRYMEKKKR 360 RKFDKKIRYA SRKARADVRK RVKGRFVKAG EAYDYDPLND TRSY

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MIMGALCDFC GEQRPTIYCR SDAASLCLSC DRNVHSANTL SQRHMRTLLC DRCASQPAAV  60
RCLEENTSLC QNCDWNGHAA TSLAAGHLRQ TINCYSGCPS SEELARIWSF DFDAPSAAAE  120
PNCEEGISMM SINDSGVSNH CGAQQDSSLL DMANTSLISD PHTREKLNTG DEMNLRPLPT  180
HQPAQSVSMA PKVPCVTDDD MFNDGSIYEN FCVDDAGLTF ENYEELFGTP HIQTEQLFDD  240
AGIDSYFGMK EMPAADCNEQ SSSVYFPCKG YITLKPAQPE CSNAVSADSS LCVPARQAIS  300
SISLSFSALT GESNAGDHQD CGVSPLLLTG EPPWLPGPEG SIASGSRGSA LSRYMEKKKR  360
RKFDKKIRYA SRKARADVRK RVKGRFVKAG EAYDYDPLND TRSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	361	KKKRR
2	357	362	KKKRRK
3	357	383	KKKRRKFDKKIRYASRKARADVRKRVK
4	358	384	KKKRRKFDKKIRYASRKARADVRKRVK
5	358	362	KKRRK
6	359	385	KKKRRKFDKKIRYASRKARADVRKRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	4e-87	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG051370.5