PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG050500.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 239aa MW: 26686.8 Da PI: 8.4846

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG050500.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.6	2.1e-08	19	40	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.7 19 PICS-FAAAGTCPYGKKCPQMHG 40 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MSSALTAQNQ APHPLAHLPI CSFAAAGTCP YGKKCPQMHG DLCTTCGKQC LHPYRPSEGG 60 AHIKLCKRNN KRLEALKKSE EIECSVCLDR VLSKPTAAEK RFGLLPECDH AFCITCIRKW 120 RSSSLTSSMD IDSTVKACPI CRKVSYYVIP SATWYSSKEE KQDIIDGYKA KLKSIDCRYF 180 DFGRDTCPFG GRCFYKHAYT DGRLEEPATV AVLHFHADNG SMEHARNIGL AYLLSRLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-93	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG050500.7