PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC6BG050500.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 362aa MW: 40554.9 Da PI: 7.4633 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 36 | 55 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6BG050500.6 36 CT-FYQNGVCSYGSRCRYEHV 55 66.6666***********997 PP | |||||||
2 | zf-CCCH | 24.9 | 3.5e-08 | 142 | 163 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.6 142 PICS-FAAAGTCPYGKKCPQMHG 163 5788.*****************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence |
CMSIRSICKF FVNGACFKGD YCQFSHDWND QPNDVCTFYQ NGVCSYGSRC RYEHVEVSSE 60 YTPPSTTAAL APFNSYRSWC PLCEGEIDVS NQTQKSLSAC SVHQSTWRFD DEDSIPEDGN 120 SLSMSSALTA QNQAPHPLAH LPICSFAAAG TCPYGKKCPQ MHGDLCTTCG KQCLHPYRPS 180 EGGAHIKLCK RNNKRLEALK KSEEIECSVC LDRVLSKPTA AEKRFGLLPE CDHAFCITCI 240 RKWRSSSLTS SMDIDSTVKA CPICRKVSYY VIPSATWYSS KEEKQDIIDG YKAKLKSIDC 300 RYFDFGRDTC PFGGRCFYKH AYTDGRLEEP ATVAVLHFHA DNGSMEHARN IGLAYLLSRL 360 HL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-117 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC6BG050500.6 |