PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG050500.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 340aa MW: 37765.8 Da PI: 7.5098

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG050500.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	14	33	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6BG050500.4 14 CT-FYQNGVCSYGSRCRYEHV 33 67.5666***********997 PP
2	zf-CCCH	25	3.3e-08	120	141	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.4 120 PICS-FAAAGTCPYGKKCPQMHG 141 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
PGLTPPGGHV EQVCTFYQNG VCSYGSRCRY EHVEVSSEYT PPSTTAALAP FNSYRSWCPL 60 CEGEIDVSNQ TQKSLSACSV HQSTWRFDDE DSIPEDGNSL SMSSALTAQN QAPHPLAHLP 120 ICSFAAAGTC PYGKKCPQMH GDLCTTCGKQ CLHPYRPSEG GAHIKLCKRN NKRLEALKKS 180 EEIECSVCLD RVLSKPTAAE KRFGLLPECD HAFCITCIRK WRSSSLTSSM DIDSTVKACP 240 ICRKVSYYVI PSATWYSSKE EKQDIIDGYK AKLKSIDCRY FDFGRDTCPF GGRCFYKHAY 300 TDGRLEEPAT VAVLHFHADN GSMEHARNIG LAYLLSRLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-100	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG050500.4