PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG050500.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 225aa MW: 24857.8 Da PI: 6.8678 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.9 | 7.3e-08 | 35 | 54 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6BG050500.19 35 CT-FYQNGVCSYGSRCRYEHV 54 66.6666***********997 PP | |||||||
2 | zf-CCCH | 25.8 | 1.9e-08 | 141 | 162 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.19 141 PICS-FAAAGTCPYGKKCPQMHG 162 5788.*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MSNRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY 60 TPPSTTAALA PFNSYRSWCP LCEGEIDVSN QTQKSLSACS VHQSTWRFDD EDSIPEDGNS 120 LSMSSALTAQ NQAPHPLAHL PICSFAAAGT CPYGKKCPQM HGDLCTTCGK QCLHPYRPSE 180 GGAHIKLCKR NNKRLEALKK SEEIECSVCL DRVLSKPTAA EKSQG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 2e-60 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG050500.19 |