PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG050500.17

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 296aa MW: 33039.5 Da PI: 7.5783

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG050500.17	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1e-07	36	55	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6BG050500.17 36 CT-FYQNGVCSYGSRCRYEHV 55 66.6666***********997 PP
2	zf-CCCH	25.3	2.7e-08	142	163	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.17 142 PICS-FAAAGTCPYGKKCPQMHG 163 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
CMSIRSICKF FVNGACFKGD YCQFSHDWND QPNDVCTFYQ NGVCSYGSRC RYEHVEVSSE 60 YTPPSTTAAL APFNSYRSWC PLCEGEIDVS NQTQKSLSAC SVHQSTWRFD DEDSIPEDGN 120 SLSMSSALTA QNQAPHPLAH LPICSFAAAG TCPYGKKCPQ MHGDLCTTCG KQCLHPYRPS 180 EGGAHIKLCK RNNKRLEALK KSEEIECSVC LDRVLSKPTA AEKRFGLLPE CDHAFCITCI 240 RKWRSSSLTS SMDIDSTVKA CPICRKVSYY VIPSATWYSS KEEKQDIIDG YKAKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	4e-95	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG050500.17