PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG050500.16
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 250aa    MW: 27592.4 Da    PI: 8.0396
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG050500.16genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-0892113426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C+ fa+ GtC+yG +C+ +Hg
  TRIDC6BG050500.16  92 PICS-FAAAGTCPYGKKCPQMHG 113
                        5788.*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
SARLDSAGSD PARRPCRTAL APFNSYRSWC PLCEGEIDVS NQTQKSLSAC SVHQSTWRFD  60
DEDSIPEDGN SLSMSSALTA QNQAPHPLAH LPICSFAAAG TCPYGKKCPQ MHGDLCTTCG  120
KQCLHPYRPS EGGAHIKLCK RNNKRLEALK KSEEIECSVC LDRVLSKPTA AEKRFGLLPE  180
CDHAFCITCI RKWRSSSLTS SMDIDSTVKA CPICRKVSYY VIPSATWYSS KEEKQDIIDG  240
YKAKLKSIDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-73C3H family protein