PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG050500.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 296aa MW: 32978.6 Da PI: 7.6166 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.7e-07 | 24 | 43 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6BG050500.13 24 CT-FYQNGVCSYGSRCRYEHV 43 55.6666***********997 PP | |||||||
2 | zf-CCCH | 25.3 | 2.7e-08 | 130 | 151 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.13 130 PICS-FAAAGTCPYGKKCPQMHG 151 5788.*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence |
MVLALKETTV NSPMTGMINQ MMVCTFYQNG VCSYGSRCRY EHVEVSSEYT PPSTTAALAP 60 FNSYRSWCPL CEGEIDVSNQ TQKSLSACSV HQSTWRFDDE DSIPEDGNSL SMSSALTAQN 120 QAPHPLAHLP ICSFAAAGTC PYGKKCPQMH GDLCTTCGKQ CLHPYRPSEG GAHIKLCKRN 180 NKRLEALKKS EEIECSVCLD RVLSKPTAAE KRFGLLPECD HAFCITCIRK WRSSSLTSSM 240 DIDSTVKACP ICRKVSYYVI PSATWYSSKE EKQDIIDGYK AKLKSIDCRY FDFGRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 3e-85 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG050500.13 |