PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG050500.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 317aa MW: 35582.3 Da PI: 7.6763

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG050500.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	34	53	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6BG050500.12 34 CT-FYQNGVCSYGSRCRYEHV 53 66.6666***********997 PP
2	zf-CCCH	25.1	3e-08	140	161	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.12 140 PICS-FAAAGTCPYGKKCPQMHG 161 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
QIRSICKFFV NGACFKGDYC QFSHDWNDQP NDVCTFYQNG VCSYGSRCRY EHVEVSSEYT 60 PPSTTAALAP FNSYRSWCPL CEGEIDVSNQ TQKSLSACSV HQSTWRFDDE DSIPEDGNSL 120 SMSSALTAQN QAPHPLAHLP ICSFAAAGTC PYGKKCPQMH GDLCTTCGKQ CLHPYRPSEG 180 GAHIKLCKRN NKRLEALKKS EEIECSVCLD RVLSKPTAAE KRFGLLPECD HAFCITCIRK 240 WRSSSLTSSM DIDSTVKACP ICRKVSYYVI PSATWYSSKE EKQDIIDGYK AKLKSIDCRY 300 FDFGRDTCPF GGRCFYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-107	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG050500.12