PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG050500.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 322aa MW: 36151 Da PI: 7.6608 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.2e-07 | 35 | 54 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6BG050500.11 35 CT-FYQNGVCSYGSRCRYEHV 54 66.6666***********997 PP | |||||||
2 | zf-CCCH | 25.1 | 3e-08 | 141 | 162 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.11 141 PICS-FAAAGTCPYGKKCPQMHG 162 5788.*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence |
MSIRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY 60 TPPSTTAALA PFNSYRSWCP LCEGEIDVSN QTQKSLSACS VHQSTWRFDD EDSIPEDGNS 120 LSMSSALTAQ NQAPHPLAHL PICSFAAAGT CPYGKKCPQM HGDLCTTCGK QCLHPYRPSE 180 GGAHIKLCKR NNKRLEALKK SEEIECSVCL DRVLSKPTAA EKRFGLLPEC DHAFCITCIR 240 KWRSSSLTSS MDIDSTVKAC PICRKVSYYV IPSATWYSSK EEKQDIIDGY KAKLKSIDCR 300 YFDFGRDTCP FGGRCFYKVY IC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-108 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG050500.11 |