PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG050500.10

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 356aa MW: 39873.1 Da PI: 7.3246

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG050500.10	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	35	54	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6BG050500.10 35 CT-FYQNGVCSYGSRCRYEHV 54 66.6666***********997 PP
2	zf-CCCH	24.9	3.4e-08	141	162	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.10 141 PICS-FAAAGTCPYGKKCPQMHG 162 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MSIRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY 60 TPPSTTAALA PFNSYRSWCP LCEGEIDVSN QTQKSLSACS VHQSTWRFDD EDSIPEDGNS 120 LSMSSALTAQ NQAPHPLAHL PICSFAAAGT CPYGKKCPQM HGDLCTTCGK QCLHPYRPSE 180 GGAHIKLCKR NNKRLEALKK SEEIECSVCL DRVLSKPTAA EKRFGLLPEC DHAFCITCIR 240 KWRSSSLTSS MDIDSTVKAC PICRKVSYYV IPSATWYSSK EEKQDIIDGY KAKLKSIDCR 300 YFDFGRDTCP FGGRCFYKHA YTDGRLEEPA TVAVLHFHAD NGSMEHARNI GLVLYI

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MSIRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY  60
TPPSTTAALA PFNSYRSWCP LCEGEIDVSN QTQKSLSACS VHQSTWRFDD EDSIPEDGNS  120
LSMSSALTAQ NQAPHPLAHL PICSFAAAGT CPYGKKCPQM HGDLCTTCGK QCLHPYRPSE  180
GGAHIKLCKR NNKRLEALKK SEEIECSVCL DRVLSKPTAA EKRFGLLPEC DHAFCITCIR  240
KWRSSSLTSS MDIDSTVKAC PICRKVSYYV IPSATWYSSK EEKQDIIDGY KAKLKSIDCR  300
YFDFGRDTCP FGGRCFYKHA YTDGRLEEPA TVAVLHFHAD NGSMEHARNI GLVLYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-116	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG050500.10