PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG048340.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRF

Protein Properties

Length: 384aa MW: 41582.3 Da PI: 10.5959

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG048340.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.4	1.2e-23	117	161	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC +++ +++k+CErH+hrgr+rsrk++e+ TRIDC6BG048340.5 117 DPEPGRCRRTDGKKWRCAKEAASDSKYCERHMHRGRNRSRKPVET 161 79****************************************997 PP
2	QLQ	61.4	2.4e-21	63	98	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvPp+L+++i++ TRIDC6BG048340.5 63 PFTAAQYEELEHQALIYKYLVAGVPVPPDLVLPIRR 98 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
WRCRMPLFPR QATAAPPRPP PPPSSPSAAP PRSPPMDVLV RSGNGGMGEE ARMAGRWMAR 60 PAPFTAAQYE ELEHQALIYK YLVAGVPVPP DLVLPIRRGI ETLAALGYGS YLGKKVDPEP 120 GRCRRTDGKK WRCAKEAASD SKYCERHMHR GRNRSRKPVE TQLVSHSQPP AASVVPPLAT 180 GFHNHSLYPA IGGTNGGGGG GNNGMPNTFS SALGPPQQHM GNNASSPYAA LGGAGTCKDF 240 RYTAYGIRSL ADEHSQLMTE AMNTSVENPW RLPPSSQTTT FPLSSYAPQL GATSDLGQNT 300 AAPLLPGVRR LRRRRRHGLR EAGEPDAAAV LRRVAQDEGL VVGPDRRQLQ PRLLLGHPAV 360 DLDTHDVLRL LGRQLPVAQR YAVR

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

WRCRMPLFPR QATAAPPRPP PPPSSPSAAP PRSPPMDVLV RSGNGGMGEE ARMAGRWMAR  60
PAPFTAAQYE ELEHQALIYK YLVAGVPVPP DLVLPIRRGI ETLAALGYGS YLGKKVDPEP  120
GRCRRTDGKK WRCAKEAASD SKYCERHMHR GRNRSRKPVE TQLVSHSQPP AASVVPPLAT  180
GFHNHSLYPA IGGTNGGGGG GNNGMPNTFS SALGPPQQHM GNNASSPYAA LGGAGTCKDF  240
RYTAYGIRSL ADEHSQLMTE AMNTSVENPW RLPPSSQTTT FPLSSYAPQL GATSDLGQNT  300
AAPLLPGVRR LRRRRRHGLR EAGEPDAAAV LRRVAQDEGL VVGPDRRQLQ PRLLLGHPAV  360
DLDTHDVLRL LGRQLPVAQR YAVR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	316	RRLRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-45	GRF family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG048340.5