PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG046540.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 285aa    MW: 30958.6 Da    PI: 5.5835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG046540.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-07727425
                      ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                      ++C+ff++ G C yG++C++ H
  TRIDC6BG046540.5  7 RPCKFFLA-GDCTYGEKCRYPH 27
                      79******.**********965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
RHKVPDRPCK FFLAGDCTYG EKCRYPHTYC MSNSITLLTP LQGHEKVVTG IALPTGSDKL  60
YSGSKDGTVR LWDCQTGQCA GVLPVGGEVG CMISEGPWLF VGIPDAVKVW NMQTQAEMNL  120
TGPTGQVYAL AIGNELLFAA TQDGRILAWR FSAVTNCFEP AASLTGHQLA VVSLIVGGMR  180
VYSGSMDKTI RVWDLATLQC IQTLSDHTNV VMSLLCWDQF LLSCSLDQTI KVWAATESGN  240
LEVTYTHKEE NGALALTGMP DAQSKPVLVC SLNDNTVRLY DLPSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.21e-148C3H family protein