PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG046200.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 807aa MW: 87612.1 Da PI: 7.4725

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG046200.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.3	1.9e-21	103	158	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r+eL+k+l+L+ rqVk+WFqNrR+++k TRIDC6BG046200.5 103 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSKRLSLDARQVKFWFQNRRTQMK 158 678899***********************************************999 PP
2	START	180.7	8e-57	317	549	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla.... 77 ela +a++elvk+a+ ++p+Wv+ es+n +e+l + + + + +ea+r+sg+v+ + ++ lve+l+d + +W+ ++ TRIDC6BG046200.5 317 ELAISAMDELVKMAQTDDPLWVTGLpgfpdkESLNFEEYLHSSQHCIGmkpagFVSEASRESGLVIIDnSVALVETLIDER-RWSDMFScmia 408 57889****************9999999999999999999966655999999*****998651669*****.******9 PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEEC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepks 158 ka++le +s+g gal lm+aelq+lsplvp R++ f+R+++ql +g w++vdvS+d ++++ ++++lpSg+++++++ TRIDC6BG046200.5 409 KATILEEVSNGiggsrnGALLLMKAELQVLSPLVPiREVIFLRFCKQLAEGAWAVVDVSIDGLLSNQNsattsAGANLKCRRLPSGCVMQDTP 501 *********************************************************88777776654222358*********** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng++kvtwveh++++++++h+ +r+l++sgla+ga++w+atlqrqce+ TRIDC6BG046200.5 502 NGYCKVTWVEHTEYDEASVHQFYRPLLRSGLAFGASRWLATLQRQCEC 549 ********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
ELRGPLRRRR RRRRHAVPLR RRLLVLARAL PRAGTRSALD NAGGRDGGIG GRMFADGAGG 60 AMARDAEAQN DSRSGSDHLD AISGVGDDDD DAEPSGSNPR KRKKRYHRHT PQQIQELEAL 120 FKECPHPDEK QRAELSKRLS LDARQVKFWF QNRRTQMKTQ LERHENALLK QENEKLRTEN 180 LTIREAMRTP MCGGCGSPAM LGEVSLEEQH LRIENARLKD ELNRVCTLAT KFLGKPVSLL 240 SPLQLQPHLS MPLPNSSLEL AVGGIGGIGS MQPSMHGMMS EYAGGASSSM GTVITPARAT 300 GSALASMVDI DRSVFLELAI SAMDELVKMA QTDDPLWVTG LPGFPDKESL NFEEYLHSSQ 360 HCIGMKPAGF VSEASRESGL VIIDNSVALV ETLIDERRWS DMFSCMIAKA TILEEVSNGI 420 GGSRNGALLL MKAELQVLSP LVPIREVIFL RFCKQLAEGA WAVVDVSIDG LLSNQNSATT 480 SAGANLKCRR LPSGCVMQDT PNGYCKVTWV EHTEYDEASV HQFYRPLLRS GLAFGASRWL 540 ATLQRQCECL AILMSSATVS PNEPTAISQE GKRSMLKLAR RMTENFCAGV SASSAREWSK 600 LDGATGSIGE DVRVMARKSV SEPGEPPGVV LSAATSVWVP IAPEKLFDFL RDEQLRAEWD 660 ILSNGGPMQE MARIAKGHQN GNSVSLLRAS AMSANQSSML ILQETCTDAS GSIVVYAPVD 720 IPAMQLVMNG GDSTYVALLP SGFAILPDGP SIGSEHKTGG SLLTVAFQIL VNSQPTAKLT 780 VESVETVNNL ISCTIKKIKT ALQCATP

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

ELRGPLRRRR RRRRHAVPLR RRLLVLARAL PRAGTRSALD NAGGRDGGIG GRMFADGAGG  60
AMARDAEAQN DSRSGSDHLD AISGVGDDDD DAEPSGSNPR KRKKRYHRHT PQQIQELEAL  120
FKECPHPDEK QRAELSKRLS LDARQVKFWF QNRRTQMKTQ LERHENALLK QENEKLRTEN  180
LTIREAMRTP MCGGCGSPAM LGEVSLEEQH LRIENARLKD ELNRVCTLAT KFLGKPVSLL  240
SPLQLQPHLS MPLPNSSLEL AVGGIGGIGS MQPSMHGMMS EYAGGASSSM GTVITPARAT  300
GSALASMVDI DRSVFLELAI SAMDELVKMA QTDDPLWVTG LPGFPDKESL NFEEYLHSSQ  360
HCIGMKPAGF VSEASRESGL VIIDNSVALV ETLIDERRWS DMFSCMIAKA TILEEVSNGI  420
GGSRNGALLL MKAELQVLSP LVPIREVIFL RFCKQLAEGA WAVVDVSIDG LLSNQNSATT  480
SAGANLKCRR LPSGCVMQDT PNGYCKVTWV EHTEYDEASV HQFYRPLLRS GLAFGASRWL  540
ATLQRQCECL AILMSSATVS PNEPTAISQE GKRSMLKLAR RMTENFCAGV SASSAREWSK  600
LDGATGSIGE DVRVMARKSV SEPGEPPGVV LSAATSVWVP IAPEKLFDFL RDEQLRAEWD  660
ILSNGGPMQE MARIAKGHQN GNSVSLLRAS AMSANQSSML ILQETCTDAS GSIVVYAPVD  720
IPAMQLVMNG GDSTYVALLP SGFAILPDGP SIGSEHKTGG SLLTVAFQIL VNSQPTAKLT  780
VESVETVNNL ISCTIKKIKT ALQCATP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	12	RGPLRRRRRR
2	7	12	RRRRRR
3	7	13	RRRRRRR
4	7	14	RRRRRRRR
5	7	22	RRRRRRRRHAVPLRRR
6	8	13	RRRRRR
7	8	14	RRRRRRR
8	8	15	RRRRRRRR
9	8	23	RRRRRRRRHAVPLRRR
10	9	14	RRRRRR
11	99	105	PRKRKKR
12	100	104	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG046200.5