PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG046200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 804aa MW: 86363.3 Da PI: 5.4706 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 1.9e-21 | 98 | 153 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r+eL+k+l+L+ rqVk+WFqNrR+++k TRIDC6BG046200.2 98 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSKRLSLDARQVKFWFQNRRTQMK 153 678899***********************************************999 PP | |||||||
2 | START | 180.8 | 8e-57 | 312 | 544 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla.... 77 ela +a++elvk+a+ ++p+Wv+ es+n +e+l + + + + +ea+r+sg+v+ + ++ lve+l+d + +W+ ++ TRIDC6BG046200.2 312 ELAISAMDELVKMAQTDDPLWVTGLpgfpdkESLNFEEYLHSSQHCIGmkpagFVSEASRESGLVIIDnSVALVETLIDER-RWSDMFScmia 403 57889******************9999999999999999999966655999999*********998651669*********.**********9 PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEEC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepks 158 ka++le +s+g gal lm+aelq+lsplvp R++ f+R+++ql +g w++vdvS+d ++++ ++++lpSg+++++++ TRIDC6BG046200.2 404 KATILEEVSNGiggsrnGALLLMKAELQVLSPLVPiREVIFLRFCKQLAEGAWAVVDVSIDGLLSNQNsattsAGANLKCRRLPSGCVMQDTP 496 *************************************************************88777776654222358*************** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng++kvtwveh++++++++h+ +r+l++sgla+ga++w+atlqrqce+ TRIDC6BG046200.2 497 NGYCKVTWVEHTEYDEASVHQFYRPLLRSGLAFGASRWLATLQRQCEC 544 **********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence |
MSFGGLFDGG GGGGGMQFPY AGAFSSSPAL SLGLDNAGGR DGGIGGRMFA DGAGGAMARD 60 AEAQNDSRSG SDHLDAISGV GDDDDDAEPS GSNPRKRKKR YHRHTPQQIQ ELEALFKECP 120 HPDEKQRAEL SKRLSLDARQ VKFWFQNRRT QMKTQLERHE NALLKQENEK LRTENLTIRE 180 AMRTPMCGGC GSPAMLGEVS LEEQHLRIEN ARLKDELNRV CTLATKFLGK PVSLLSPLQL 240 QPHLSMPLPN SSLELAVGGI GGIGSMQPSM HGMMSEYAGG ASSSMGTVIT PARATGSALA 300 SMVDIDRSVF LELAISAMDE LVKMAQTDDP LWVTGLPGFP DKESLNFEEY LHSSQHCIGM 360 KPAGFVSEAS RESGLVIIDN SVALVETLID ERRWSDMFSC MIAKATILEE VSNGIGGSRN 420 GALLLMKAEL QVLSPLVPIR EVIFLRFCKQ LAEGAWAVVD VSIDGLLSNQ NSATTSAGAN 480 LKCRRLPSGC VMQDTPNGYC KVTWVEHTEY DEASVHQFYR PLLRSGLAFG ASRWLATLQR 540 QCECLAILMS SATVSPNEPT AISQEGKRSM LKLARRMTEN FCAGVSASSA REWSKLDGAT 600 GSIGEDVRVM ARKSVSEPGE PPGVVLSAAT SVWVPIAPEK LFDFLRDEQL RAEWDILSNG 660 GPMQEMARIA KGHQNGNSVS LLRASAMSAN QSSMLILQET CTDASGSIVV YAPVDIPAMQ 720 LVMNGGDSTY VALLPSGFAI LPDGPSIGSE HKTGGSLLTV AFQILVNSQP TAKLTVESVE 780 TVNNLISCTI KKIKTALQCA TPEC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 100 | PRKRKKR |
2 | 95 | 99 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG046200.2 |