PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG042270.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 691aa MW: 74843.1 Da PI: 7.7312

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG042270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.5	1.3e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + TRIDC6BG042270.1 123 FSKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVIAKDVHGTAWKFRHIYRGTPRRHLLTTGWSAFVNQKKLVAGDSIVFL--R 211 88***************************96555555..8********************************************..3 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ l+v+++r+ TRIDC6BG042270.1 212 GDGGDLHVGIRRA 224 488999***97 PP
2	Auxin_resp	112.7	3.6e-37	268	351	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ ++p+rWp+S+Wr+L+ TRIDC6BG042270.1 268 AARLAGSGQPFEVVYFPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVAHPTRWPQSPWRLLQ 351 6778899***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MITFADLTEP APGAERRVDR QLWLACAGGM CTVPPVGCTV YYFPQGHAEH ALGLDAGADL 60 SAARVPALVP CRVAAVRYVA DTDTDEVFAR IRLAPLGATD ADGDIHDDAA AAADDEQEKP 120 ASFSKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVIAKDVHG TAWKFRHIYR 180 GTPRRHLLTT GWSAFVNQKK LVAGDSIVFL RGDGGDLHVG IRRAKRGFCG AEEGSLSLTG 240 WGRYSGPMRG NASPCTRGKV RAEDVVEAAR LAGSGQPFEV VYFPRASTPE FCVRAAAVRA 300 AMRVQWCPGM RFKMAFETED SSRISWFMGT VAGVQVAHPT RWPQSPWRLL QVTWDEPDLL 360 QNVKRVSPWL VEIVSSMPAM HLASFSPPRK KSRIPAYPEF PFEGQLLNPS FPPNPMAHGH 420 RRHYHHTDSY HPSFSPFPDC SAPSGIQGAR HSQFGPFLSD LHLTHLQSRL MYPGLRCHDH 480 VSPAPIPSRI TTDLTIGSSP ARNGVSTTLP ASAKRPNDAK PPGLVLFGQT ILTEQQMSRG 540 DLAGVSSAAA TGNSSLNWNT DKAGNASQGS GSTVVQNSGS TDNTSPERPR RFGDNSHVSE 600 LGLKPGQCKV FVESDTVGRN LDCSAMSSFE ELYGRLSETF CIEGAELRSR VLYRGADGEV 660 KHAGDEPFSE FIKSARRLTV LTDAGSNNTA S

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MITFADLTEP APGAERRVDR QLWLACAGGM CTVPPVGCTV YYFPQGHAEH ALGLDAGADL  60
SAARVPALVP CRVAAVRYVA DTDTDEVFAR IRLAPLGATD ADGDIHDDAA AAADDEQEKP  120
ASFSKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVIAKDVHG TAWKFRHIYR  180
GTPRRHLLTT GWSAFVNQKK LVAGDSIVFL RGDGGDLHVG IRRAKRGFCG AEEGSLSLTG  240
WGRYSGPMRG NASPCTRGKV RAEDVVEAAR LAGSGQPFEV VYFPRASTPE FCVRAAAVRA  300
AMRVQWCPGM RFKMAFETED SSRISWFMGT VAGVQVAHPT RWPQSPWRLL QVTWDEPDLL  360
QNVKRVSPWL VEIVSSMPAM HLASFSPPRK KSRIPAYPEF PFEGQLLNPS FPPNPMAHGH  420
RRHYHHTDSY HPSFSPFPDC SAPSGIQGAR HSQFGPFLSD LHLTHLQSRL MYPGLRCHDH  480
VSPAPIPSRI TTDLTIGSSP ARNGVSTTLP ASAKRPNDAK PPGLVLFGQT ILTEQQMSRG  540
DLAGVSSAAA TGNSSLNWNT DKAGNASQGS GSTVVQNSGS TDNTSPERPR RFGDNSHVSE  600
LGLKPGQCKV FVESDTVGRN LDCSAMSSFE ELYGRLSETF CIEGAELRSR VLYRGADGEV  660
KHAGDEPFSE FIKSARRLTV LTDAGSNNTA S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG042270.1