PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG029180.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 260aa MW: 27128.7 Da PI: 8.8876 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.6 | 9.3e-08 | 63 | 88 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6BG029180.6 63 KTKLCNKYNTAEGCKWGDKCHFAHGE 88 8***********************96 PP | |||||||
2 | zf-CCCH | 35.9 | 1.2e-11 | 226 | 251 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6BG029180.6 226 FKTKLCDNFTK-GSCTFGDRCHFAHGE 251 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
CPPNCLTAGC PFGEGCHFLH YFPGGHQAVA KMSNLGGQAF AHPQGRVPAG SAVPDGHPTP 60 TVKTKLCNKY NTAEGCKWGD KCHFAHGERE LGKQTFINNS MPPHMGPRPT GHFGPPAMPS 120 PGMATPAGFG ASSTAKVSVD ASLAGAIIGR GGVNTKQISR VTGAKLAIRD HESNEALKNI 180 ELEGTFDQIN NASAMLRELI FRISGGANAP PPGVISAGGS HRGSNFKTKL CDNFTKGSCT 240 FGDRCHFAHG ENELRKSAAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-57 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG029180.6 |