PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG029180.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 229aa    MW: 23886.9 Da    PI: 9.728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG029180.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.8e-083257227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kt+lC+ +     Ck Gd+C+FaHg+
  TRIDC6BG029180.5 32 KTKLCNKYNTAEGCKWGDKCHFAHGE 57
                      8***********************96 PP
2zf-CCCH36.21e-11195220127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC++f + G C +GdrC+FaHg+
  TRIDC6BG029180.5 195 FKTKLCDNFTK-GSCTFGDRCHFAHGE 220
                       69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSNLGGQAFA HPQGRVPAGS AVPDGHPTPT VKTKLCNKYN TAEGCKWGDK CHFAHGEREL  60
GKQTFINNSM PPHMGPRPTG HFGPPAMPSP GMATPAGFGA SSTAKVSVDA SLAGAIIGRG  120
GVNTKQISRV TGAKLAIRDH ESNEALKNIE LEGTFDQINN ASAMLRELIF RISGGANAPP  180
PGVISAGGSH RGSNFKTKLC DNFTKGSCTF GDRCHFAHGE NELRKSAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-59C3H family protein