PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG029180.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 328aa MW: 34019.4 Da PI: 10.2793

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG029180.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	131	156	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6BG029180.3 131 KTKLCNKYNTAEGCKWGDKCHFAHGE 156 8***********************96 PP
2	zf-CCCH	35.5	1.7e-11	294	319	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6BG029180.3 294 FKTKLCDNFTK-GSCTFGDRCHFAHGE 319 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
GSLPPPLLAA TTHRPQTLAK LAGATARAHA AMEGGGRKRG TPDGASVGGK RTRESESFQT 60 GVGSKSKPCT KFFSTAGCPF GEGCHFLHYF PGGHQAVAKM SNLGGQAFAH PQGRVPAGSA 120 VPDGHPTPTV KTKLCNKYNT AEGCKWGDKC HFAHGERELG KQTFINNSMP PHMGPRPTGH 180 FGPPAMPSPG MATPAGFGAS STAKVSVDAS LAGAIIGRGG VNTKQISRVT GAKLAIRDHE 240 SNEALKNIEL EGTFDQINNA SAMLRELIFR ISGGANAPPP GVISAGGSHR GSNFKTKLCD 300 NFTKGSCTFG DRCHFAHGEN ELRKSAAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	3e-57	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG029180.3