PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG029170.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 264aa MW: 27900.5 Da PI: 9.3833 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.5e-08 | 61 | 86 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6BG029170.3 61 KTKLCNKYNTAEGCKWGDKCHFAHGE 86 8***********************96 PP | |||||||
2 | zf-CCCH | 35.9 | 1.3e-11 | 230 | 255 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6BG029170.3 230 FKTKLCDNFTK-GSCTFGDRCHFAHGE 255 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence |
MIFFTAGCPF GEGCHFLHYF PGGQQAVAKM SNLGGQAFAH PQGRMPTGSA VPDGPPTPTV 60 KTKLCNKYNT AEGCKWGDKC HFAHGERELG KHTFINNSMP PHMGPRPTGH FGPPAMPSPA 120 MTTPAGFGAS STAKVSVDAS LVGGIIGRDG VNTKQISRVT GAKLAIRDHE SNKALKNIEL 180 EGTFDQINNA SAMLRELFFR ISGGANTPPP SENLAGGYHR GGAGGQGRNF KTKLCDNFTK 240 GSCTFGDRCH FAHGENELRK SAAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 5e-56 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG029170.3 |