PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG029170.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 263aa MW: 27764.3 Da PI: 9.3831 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.5e-08 | 60 | 85 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6BG029170.2 60 KTKLCNKYNTAEGCKWGDKCHFAHGE 85 8***********************96 PP | |||||||
2 | zf-CCCH | 35.9 | 1.3e-11 | 229 | 254 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6BG029170.2 229 FKTKLCDNFTK-GSCTFGDRCHFAHGE 254 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MRDTAGCPFG EGCHFLHYFP GGQQAVAKMS NLGGQAFAHP QGRMPTGSAV PDGPPTPTVK 60 TKLCNKYNTA EGCKWGDKCH FAHGERELGK HTFINNSMPP HMGPRPTGHF GPPAMPSPAM 120 TTPAGFGASS TAKVSVDASL VGGIIGRDGV NTKQISRVTG AKLAIRDHES NKALKNIELE 180 GTFDQINNAS AMLRELFFRI SGGANTPPPS ENLAGGYHRG GAGGQGRNFK TKLCDNFTKG 240 SCTFGDRCHF AHGENELRKS AAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-55 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG029170.2 |